Add more Ruff rules (#891)

* ruff: apply rule F

* ruff: apply rule E

* ruff: apply rule SIM

* ruff: apply rule TCH

* ruff: apply rule ERA

* ruff: apply rule PLW

* ruff: apply rule FLY

* ruff: apply rule PERF

* ruff: apply rules FURB & RUF

galaxy/management/commands/rule_galaxy.py

@@ -40,7 +40,7 @@ class Command(BaseCommand):
 
     def handle(self, *args, **options):
         logger = logging.getLogger("main")
-        if options["verbosity"] < 0 or 2 < options["verbosity"]:
+        if not 0 <= options["verbosity"] <= 2:
             warnings.warn(
                 "verbosity level should be between 0 and 2 included", stacklevel=2
             )